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Python. PyCharm – Cross-platform Python IDE with code inspections available for analyzing code on-the-fly in the editor and bulk analysis of the whole project. PyDev – Eclipse-based Python IDE with code analysis available on-the-fly in the editor or at save time. Pylint – Static code analyzer.
Spyder (software) Spyder is an open-source cross-platform integrated development environment (IDE) for scientific programming in the Python language. Spyder integrates with a number of prominent packages in the scientific Python stack, including NumPy, SciPy, Matplotlib, pandas, IPython, SymPy and Cython, as well as other open-source software.
The software is powered by recurrent neural networks and guided by a large collection of manually-annotated chromatographic peaks. ProtMax. Freeware. ProtMAX [41] is a software tool for analyzing shotgun proteomics mass spectrometry data sets, developed by Volker Egelhofer at the University of Vienna.
Understand (software) Understand is a customizable integrated development environment (IDE) that enables static code analysis through an array of visuals, documentation, and metric tools. [2] It was built to help software developers comprehend, maintain, and document their source code. [3] It enables code comprehension by providing flow charts ...
Python GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. jsPhyloSVG Javascript open-source javascript library for rendering highly-extensible, customizable phylogenetic trees; used for Elsevier's interactive trees PhyD3 Javascript
Coverity is a proprietary static code analysis tool from Synopsys. This product enables engineers and security teams to find and fix software defects. Coverity started as an independent software company in 2002 at the Computer Systems Laboratory at Stanford University in Palo Alto, California. It was founded by Benjamin Chelf, Andy Chou, and ...
Source-code editor. License. MIT License ( free software) [6] [7] Website. atom .io. Atom is a free and open-source text and source-code editor for macOS, Linux, and Windows with support for plug-ins written in JavaScript, and embedded Git control. Developed by GitHub, Atom was released on June 25, 2015. [8]
PknotsRG. A dynamic programming algorithm for the prediction of a restricted class (H-type) of RNA pseudoknots. Yes. sourcecode, webserver. [20] RNA123. Secondary structure prediction via thermodynamic-based folding algorithms and novel structure-based sequence alignment specific for RNA. Yes. webserver.