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Source-code editor. License. MIT License ( free software) [6] [7] Website. atom .io. Atom is a free and open-source text and source-code editor for macOS, Linux, and Windows with support for plug-ins written in JavaScript, and embedded Git control. Developed by GitHub, Atom was released on June 25, 2015. [8]
Spyder (software) Spyder is an open-source cross-platform integrated development environment (IDE) for scientific programming in the Python language. Spyder integrates with a number of prominent packages in the scientific Python stack, including NumPy, SciPy, Matplotlib, pandas, IPython, SymPy and Cython, as well as other open-source software.
PknotsRG. A dynamic programming algorithm for the prediction of a restricted class (H-type) of RNA pseudoknots. Yes. sourcecode, webserver. [20] RNA123. Secondary structure prediction via thermodynamic-based folding algorithms and novel structure-based sequence alignment specific for RNA. Yes. webserver.
Python. PyCharm – Cross-platform Python IDE with code inspections available for analyzing code on-the-fly in the editor and bulk analysis of the whole project. PyDev – Eclipse-based Python IDE with code analysis available on-the-fly in the editor or at save time. Pylint – Static code analyzer.
Xcas. Xcas/Giac is an open-source project developed at the Joseph Fourier University of Grenoble since 2000. Written in C++, maintained by Bernard Parisse's [ fr] et al. and available for Windows, Mac, Linux and many others platforms. It has a compatibility mode with Maple, Derive and MuPAD software and TI-89, TI-92 and Voyage 200 calculators.
The Wing Python IDE is a family of integrated development environments (IDEs) from Wingware created specifically for the Python programming language with support for editing, testing, debugging, inspecting/browsing, and error-checking Python code. There are three version of this IDE, each focused on different types of users:
Leo can manipulate text or code in any human or computer programming language (e.g., Python, C, C++, Java), as Leo is a language-independent or "adaptable LPE" ( literate programming environment). [1] Syntax highlighting is provided for many different programming languages. [2] Leo is written in Python and can be extended with plugins written ...
Automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences. Eukaryotes. [1] FragGeneScan. Predicting genes in complete genomes and sequencing Reads. Prokaryotes, Metagenomes. [2] ATGpr. Identifies translational initiation sites in cDNA sequences.